Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E1027260.1a.10b.20g.45a.45e with 1 members (ribose-phosphate pyrophosphokinase)

LUCA / Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia /

... /

Chordata / Vertebrata / Gnathostomata / Euteleostomi /

Sarcopterygii /

Completeness score: 0.01

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

97.9%

This HOG has 154 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0792939	Opisthokonta	922		58.1%	2
HOG:E0961756	o__Pseudomonadales	25		100.0%	2
HOG:E0142558	Alveolata	21		90.5%	2
HOG:E0764778	Bilateria	20		80.0%	2
HOG:E0801075	Opisthokonta	14		71.4%	2
HOG:E0066861	Metakinetoplastina	13		76.9%	2
HOG:E0833158	Eukaryota	7		71.4%	2
HOG:E0796814	Opisthokonta	6		50.0%	2
HOG:E0820336	Eukaryota	6		83.3%	2
HOG:E0823278	Eukaryota	6		100.0%	2
HOG:E0143753	Alveolata	5		80.0%	2
HOG:E0270095	Pentapetalae	5		100.0%	2
HOG:E0943246	s__Rickettsia rickettsii	5		100.0%	2
HOG:E0129284	Sarcocystidae	4		100.0%	2
HOG:E0633344	Endopterygota	4		50.0%	2
HOG:E0084756	Peronosporaceae	3		66.7%	2
HOG:E0394420	Agaricomycetes	3		100.0%	2
HOG:E0464011	Sordariomycetes	3		66.7%	2
HOG:E0653689	Ecdysozoa	3		100.0%	2
HOG:E1027331	LUCA	2982		88.8%	1
HOG:E1029077	LUCA	2415		99.3%	1
HOG:E0991952	Bacteria	2290		86.0%	1
HOG:E0991043	Bacteria	1842		99.9%	1
HOG:E0990842	Bacteria	1526		99.1%	1
HOG:E1030662	LUCA	1518		100.0%	1

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