Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0828379 with 60 members (Zinc finger ccch-type with)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa /

... /

Panarthropoda / Arthropoda / Mandibulata /

Pancrustacea /

Completeness score: 0.81

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

48.2%

This HOG has 803 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0762674	Bilateria	5		60.0%	2
HOG:E0801671	Eukaryota	1067		89.1%	1
HOG:E0807583	Eukaryota	938		79.5%	1
HOG:E0802581	Eukaryota	787		87.5%	1
HOG:E0790275	Metazoa	662		93.4%	1
HOG:E0806267	Eukaryota	638		84.0%	1
HOG:E0795524	Opisthokonta	560		56.6%	1
HOG:E0801569	Eukaryota	544		87.1%	1
HOG:E0815908	Eukaryota	452		93.6%	1
HOG:E0778401	Eumetazoa	422		45.5%	1
HOG:E0778516	Eumetazoa	419		76.4%	1
HOG:E0804232	Eukaryota	412		88.1%	1
HOG:E0763043	Bilateria	395		86.8%	1
HOG:E0788388	Eumetazoa	372		86.8%	1
HOG:E0781489	Eumetazoa	355		44.5%	1
HOG:E0802254	Eukaryota	351		10.5%	1
HOG:E0783245	Eumetazoa	337		91.7%	1
HOG:E0780353	Eumetazoa	324		83.3%	1
HOG:E0758154	Chordata	315		86.7%	1
HOG:E0763944	Bilateria	309		94.5%	1
HOG:E0762822	Bilateria	293		91.1%	1
HOG:E0784066	Eumetazoa	293		84.0%	1
HOG:E0783333	Eumetazoa	287		74.6%	1
HOG:E0755424	Chordata	283		37.5%	1
HOG:E0778204	Eumetazoa	281		75.4%	1

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