Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0814777.1a with 20 members (PX domain containing serine/threonine kinase)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini /

Simiiformes /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

58.7%

This HOG has 11932 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0790575	Metazoa	190		66.3%	2
HOG:E0771485	Bilateria	76		76.3%	2
HOG:E0090686	Oomycota	11		81.8%	2
HOG:E0091593	Stramenopiles	11		90.9%	2
HOG:E0067389	Metakinetoplastina	10		50.0%	2
HOG:E0121146	Oligohymenophorea	10		100.0%	2
HOG:E0090640	Oomycota	9		100.0%	2
HOG:E0090669	Oomycota	9		88.9%	2
HOG:E0780408	Eumetazoa	6		66.7%	2
HOG:E0046590	Entamoeba	5		80.0%	2
HOG:E0051868	Dictyostelia	5		60.0%	2
HOG:E0795885	Opisthokonta	4		50.0%	2
HOG:E0801468	Eukaryota	253956		10.5%	1
HOG:E0792940	Opisthokonta	40110		20.2%	1
HOG:E0276795	Mesangiospermae	5065		16.2%	1
HOG:E0892225	g__Streptomyces	4183		9.5%	1
HOG:E0789610	Metazoa	2453		78.9%	1
HOG:E0793013	Opisthokonta	1937		57.9%	1
HOG:E0802823	Eukaryota	1880		10.0%	1
HOG:E0854922	p__Planctomycetota	1834		18.2%	1
HOG:E1027768	LUCA	1700		14.6%	1
HOG:E0793032	Opisthokonta	1669		45.5%	1
HOG:E0388628	Agaricomycetes incertae sedis	1624		2.9%	1
HOG:E0793096	Opisthokonta	1586		50.7%	1
HOG:E0793140	Opisthokonta	1570		97.7%	1

Showing 1 to 25 of 11931 rows rows per page