Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0810760.1c.5a.9a with 47 members (sulfotransferase)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi /

Neopterygii /

Completeness score: 0.98

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

99.4%

This HOG has 14115 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0990642	Bacteria	394974		10.4%	1
HOG:E0801484	Eukaryota	21674		99.0%	1
HOG:E0801531	Eukaryota	21349		38.9%	1
HOG:E0988166	p__Proteobacteria	19552		99.7%	1
HOG:E0990677	Bacteria	11993		25.9%	1
HOG:E1027819	LUCA	10243		98.3%	1
HOG:E0990781	Bacteria	9970		78.8%	1
HOG:E0990928	Bacteria	8201		3.0%	1
HOG:E0991058	Bacteria	7699		67.8%	1
HOG:E0990862	Bacteria	7038		38.2%	1
HOG:E0802052	Eukaryota	6491		99.0%	1
HOG:E0792942	Opisthokonta	6175		77.8%	1
HOG:E0990823	Bacteria	6015		32.2%	1
HOG:E0990660	Bacteria	5613		65.3%	1
HOG:E0807520	Eukaryota	5407		86.8%	1
HOG:E0805156	Eukaryota	5124		97.2%	1
HOG:E0935042	c__Bacilli	5045		86.6%	1
HOG:E0990860	Bacteria	4688		46.4%	1
HOG:E0792948	Opisthokonta	4325		98.8%	1
HOG:E0793108	Opisthokonta	3789		97.8%	1
HOG:E0991062	Bacteria	3642		47.1%	1
HOG:E0801472	Eukaryota	3587		45.4%	1
HOG:E1027286	LUCA	3371		96.0%	1
HOG:E1027419	LUCA	3361		99.0%	1
HOG:E1027386	LUCA	3192		90.6%	1

Showing 1 to 25 of 14114 rows rows per page