Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0809788.1b.4e with 3 members (arylsulfatase family member)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini / Simiiformes / Catarrhini / Cercopithecidae /

Colobinae /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

91.9%

This HOG has 504 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0778334	Eumetazoa	166		86.7%	2
HOG:E1029129	LUCA	138		96.4%	2
HOG:E0838389	p__Verrucomicrobiota	107		92.5%	2
HOG:E0656432	Protostomia	89		84.3%	2
HOG:E0852302	p__Myxococcota	84		51.2%	2
HOG:E0649462	Ecdysozoa	82		84.1%	2
HOG:E0631300	Endopterygota	74		97.3%	2
HOG:E0589750	Arachnida	70		85.7%	2
HOG:E0789779	Metazoa	60		93.3%	2
HOG:E0887175	c__Bacteroidia	60		85.0%	2
HOG:E0761159	Bilateria	53		90.6%	2
HOG:E0518761	Euthyneura	51		92.2%	2
HOG:E0885809	f__Flavobacteriaceae	44		97.7%	2
HOG:E0659035	Protostomia	43		81.4%	2
HOG:E0885812	f__Flavobacteriaceae	43		62.8%	2
HOG:E0635149	Neoptera	38		92.1%	2
HOG:E0886811	c__Bacteroidia	32		84.4%	2
HOG:E0536816	Lophotrochozoa	26		53.8%	2
HOG:E0625316	Acalyptratae	24		87.5%	2
HOG:E1029093	LUCA	24		58.3%	2
HOG:E0854469	c__Planctomycetia	23		100.0%	2
HOG:E0588804	Parasitiformes	18		83.3%	2
HOG:E0584455	Ixodidae	16		100.0%	2
HOG:E0145450	Sar	15		80.0%	2
HOG:E0809796	Eukaryota	15		60.0%	2

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