Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0805279.4a.12a.28a with 52 members (phosphotransferase)

Eukaryota / Opisthokonta / Fungi / Dikarya / Basidiomycota /

Completeness score: 0.93

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

73.4%

This HOG has 858 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E1027749	LUCA	709		99.3%	2
HOG:E0831895	Eukaryota	637		82.4%	2
HOG:E0476362	Pezizomycotina	128		88.3%	2
HOG:E0478005	Ascomycota	117		90.6%	2
HOG:E1004725	Bacteria	40		80.0%	2
HOG:E0404929	Saccharomycetales	32		81.3%	2
HOG:E0968310	f__Burkholderiaceae	28		100.0%	2
HOG:E0811313	Eukaryota	27		100.0%	2
HOG:E0818382	Eukaryota	23		82.6%	2
HOG:E0708252	Lepidosauria	14		57.1%	2
HOG:E0343069	Microsporidia	9		66.7%	2
HOG:E0463929	Sordariomycetes	7		85.7%	2
HOG:E0280974	Mesangiospermae	6		50.0%	2
HOG:E0651715	Ecdysozoa	6		100.0%	2
HOG:E0769702	Bilateria	6		50.0%	2
HOG:E0770894	Bilateria	6		83.3%	2
HOG:E0783797	Eumetazoa	6		83.3%	2
HOG:E0309917	Euphyllophyta	5		100.0%	2
HOG:E0829912	Eukaryota	5		100.0%	2
HOG:E0261329	fabids	4		50.0%	2
HOG:E0565380	Chromadorea	4		75.0%	2
HOG:E0331269	Rhizopus	3		66.7%	2
HOG:E0438806	Eurotiales	3		100.0%	2
HOG:E0571514	Araneoidea	3		100.0%	2
HOG:E0990770	Bacteria	5687		38.8%	1

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