Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0805243.4i.42f with 2 members (decarboxylase)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa /

... /

Panarthropoda / Arthropoda / Mandibulata / Pancrustacea / Hexapoda / Neoptera / Endopterygota / Apocrita / Aculeata / Formicidae /

Myrmicinae /

Completeness score: 0.67

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

46.5%

This HOG has 668 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0656128	Protostomia	106		90.6%	3
HOG:E0813363	Eukaryota	13		30.8%	3
HOG:E0632586	Endopterygota	8		75.0%	3
HOG:E0438053	Aspergillaceae	5		80.0%	3
HOG:E0555103	Caenorhabditis	5		100.0%	3
HOG:E0594601	Entomobryomorpha	4		75.0%	3
HOG:E0574931	Tetranychidae	3		100.0%	3
HOG:E0990674	Bacteria	14600		65.6%	2
HOG:E0990666	Bacteria	8582		98.9%	2
HOG:E0990709	Bacteria	8390		67.7%	2
HOG:E0990766	Bacteria	4495		97.4%	2
HOG:E1027291	LUCA	4095		91.2%	2
HOG:E0990720	Bacteria	3588		89.4%	2
HOG:E1027421	LUCA	3304		93.2%	2
HOG:E0802351	Eukaryota	2733		86.5%	2
HOG:E1030073	LUCA	2702		99.0%	2
HOG:E0802203	Eukaryota	2165		94.4%	2
HOG:E0801928	Eukaryota	2027		92.7%	2
HOG:E0802012	Eukaryota	1925		88.8%	2
HOG:E1033113	LUCA	1588		75.6%	2
HOG:E0802516	Eukaryota	1453		86.9%	2
HOG:E0994676	Bacteria	1328		36.7%	2
HOG:E0802229	Eukaryota	1290		52.9%	2
HOG:E0990909	Bacteria	1110		60.2%	2
HOG:E0990934	Bacteria	1089		49.8%	2

Showing 1 to 25 of 667 rows rows per page