Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0803048.6c.6d with 36 members (rRNA methyltransferase)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia /

Completeness score: 0.25

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

68.6%

This HOG has 266 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0780258	Eumetazoa	278		58.6%	2
HOG:E0889645	p__Bacteroidota	216		91.2%	2
HOG:E0847103	p__Chloroflexota	26		88.5%	2
HOG:E0262957	rosids	18		88.9%	2
HOG:E0295303	Magnoliopsida	12		66.7%	2
HOG:E0629946	Diptera	4		75.0%	2
HOG:E0555638	Caenorhabditis	3		66.7%	2
HOG:E0991380	Bacteria	1914		60.1%	1
HOG:E1036894	LUCA	1894		98.5%	1
HOG:E1033111	LUCA	1393		99.9%	1
HOG:E1027602	LUCA	1388		100.0%	1
HOG:E1027408	LUCA	1317		98.6%	1
HOG:E1027263	LUCA	1240		86.0%	1
HOG:E0801915	Eukaryota	1150		99.0%	1
HOG:E1027388	LUCA	975		93.8%	1
HOG:E0801709	Eukaryota	948		99.4%	1
HOG:E0802435	Eukaryota	841		97.4%	1
HOG:E0777963	Eumetazoa	673		99.6%	1
HOG:E0807744	Eukaryota	537		74.5%	1
HOG:E0995471	Bacteria	277		100.0%	1
HOG:E0995576	Bacteria	195		100.0%	1
HOG:E0796177	Opisthokonta	194		94.3%	1
HOG:E0749035	Gnathostomata	191		100.0%	1
HOG:E0017550	Archaea	172		100.0%	1
HOG:E0755429	Chordata	166		98.8%	1

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