Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802676.5c with 2 members (U4/u6 small nuclear ribonucleoprotein prp31)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa /

... /

Panarthropoda / Arthropoda / Arachnida / Acari / Parasitiformes / Ixodidae / Rhipicephalinae /

Dermacentor

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

65.1%

This HOG has 17 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0801712	Eukaryota	845		59.2%	2
HOG:E0801950	Eukaryota	841		61.7%	2
HOG:E0017694	Archaea	167		42.5%	2
HOG:E0343403	Fungi incertae sedis	66		84.8%	2
HOG:E0270063	Pentapetalae	11		54.5%	2
HOG:E0815987	Eukaryota	5		40.0%	2
HOG:E0505810	Platyhelminthes	4		50.0%	2
HOG:E0282576	Mesangiospermae	21		33.3%	1
HOG:E0817564	Eukaryota	17		76.5%	1
HOG:E0066046	Metakinetoplastina	13		100.0%	1
HOG:E0796854	Opisthokonta	11		72.7%	1
HOG:E0783617	Eumetazoa	5		40.0%	1
HOG:E0200103	Oryza	5		60.0%	1
HOG:E0775024	Bilateria	5		80.0%	1
HOG:E0002633	f__Thermoplasmataceae	3		100.0%	1
HOG:E0302210	Spermatophyta	3		66.7%	1

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