Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802435.4a with 25 members (Ribosomal rna small subunit methyltransferase nep1)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Lophotrochozoa /

Completeness score: 0.92

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

97.4%

This HOG has 153 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0991380	Bacteria	1914		60.1%	1
HOG:E1036894	LUCA	1894		98.5%	1
HOG:E1033111	LUCA	1393		99.9%	1
HOG:E1027602	LUCA	1388		100.0%	1
HOG:E0807744	Eukaryota	537		74.5%	1
HOG:E0803048	Eukaryota	328		68.6%	1
HOG:E0780258	Eumetazoa	278		58.6%	1
HOG:E0889645	p__Bacteroidota	216		91.2%	1
HOG:E0796177	Opisthokonta	194		94.3%	1
HOG:E0808111	Eukaryota	157		100.0%	1
HOG:E0017662	Archaea	146		98.6%	1
HOG:E0017873	Archaea	143		81.8%	1
HOG:E1030205	LUCA	120		100.0%	1
HOG:E0991567	Bacteria	117		100.0%	1
HOG:E1004368	Bacteria	114		100.0%	1
HOG:E0804948	Eukaryota	112		75.0%	1
HOG:E0018549	Archaea	111		97.3%	1
HOG:E0018573	Archaea	94		100.0%	1
HOG:E0313374	Tracheophyta	89		100.0%	1
HOG:E0319841	Streptophyta	84		86.9%	1
HOG:E0321316	Viridiplantae	83		77.1%	1
HOG:E0278029	Mesangiospermae	80		88.8%	1
HOG:E0805395	Eukaryota	55		100.0%	1
HOG:E0866364	o__Campylobacterales	54		100.0%	1
HOG:E0949887	o__Rhizobiales	54		55.6%	1

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