Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802390.5b.3a.9a.13a with 7 members (ubx domain-containing protein)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini / Simiiformes / Catarrhini / Cercopithecidae /

Cercopithecinae /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

52.9%

This HOG has 2173 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0466800	leotiomyceta	6		100.0%	3
HOG:E0802218	Eukaryota	1198		91.1%	2
HOG:E0802507	Eukaryota	1091		49.8%	2
HOG:E0802130	Eukaryota	755		65.6%	2
HOG:E0793224	Opisthokonta	495		81.6%	2
HOG:E0807862	Eukaryota	397		53.9%	2
HOG:E0801475	Eukaryota	368		78.5%	2
HOG:E0795458	Opisthokonta	281		72.6%	2
HOG:E0780371	Eumetazoa	279		77.1%	2
HOG:E0780161	Eumetazoa	236		90.3%	2
HOG:E0784190	Eumetazoa	214		93.9%	2
HOG:E0747103	Gnathostomata	190		50.0%	2
HOG:E0803879	Eukaryota	169		69.8%	2
HOG:E0796737	Opisthokonta	164		96.3%	2
HOG:E0803433	Eukaryota	155		80.6%	2
HOG:E0297465	Spermatophyta	153		71.2%	2
HOG:E0310801	Tracheophyta	146		78.8%	2
HOG:E0142059	Alveolata	101		46.5%	2
HOG:E0731680	Mammalia	59		50.8%	2
HOG:E0729928	Theria	44		47.7%	2
HOG:E0729929	Theria	30		93.3%	2
HOG:E0691741	Percomorphaceae	27		63.0%	2
HOG:E0621982	Drosophila	26		88.5%	2
HOG:E0712541	Sauria	24		87.5%	2
HOG:E0623216	Drosophila	19		100.0%	2

Showing 1 to 25 of 2172 rows rows per page