Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802143.8a.7a.2a with 27 members (structural maintenance of chromosomes protein)

Eukaryota / Sar / Alveolata / Apicomplexa /

Completeness score: 0.79

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

84.3%

This HOG has 14126 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0802444	Eukaryota	742		70.4%	4
HOG:E0041029	Metamonada	6		66.7%	4
HOG:E0385621	Trametes	4		50.0%	4
HOG:E0576884	Astigmata	3		100.0%	4
HOG:E0582057	Rhipicephalinae	3		66.7%	4
HOG:E0311437	Tracheophyta	12		66.7%	3
HOG:E0770795	Bilateria	7		42.9%	3
HOG:E0589788	Arachnida	6		66.7%	3
HOG:E0638307	Hexapoda	5		40.0%	3
HOG:E0991058	Bacteria	7699		67.8%	2
HOG:E0990862	Bacteria	7038		38.2%	2
HOG:E0792942	Opisthokonta	6175		77.8%	2
HOG:E0990860	Bacteria	4688		46.4%	2
HOG:E0991062	Bacteria	3642		47.1%	2
HOG:E0801680	Eukaryota	2900		12.1%	2
HOG:E0991965	Bacteria	2417		38.1%	2
HOG:E1027284	LUCA	2370		94.3%	2
HOG:E1033343	LUCA	2267		43.6%	2
HOG:E0990854	Bacteria	2196		30.9%	2
HOG:E1033116	LUCA	2183		97.4%	2
HOG:E0792989	Opisthokonta	2157		96.6%	2
HOG:E0801631	Eukaryota	2102		51.3%	2
HOG:E0802754	Eukaryota	2013		95.3%	2
HOG:E1027589	LUCA	2013		57.9%	2
HOG:E1036751	LUCA	1880		79.9%	2

Showing 1 to 25 of 14125 rows rows per page