Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802128.23b with 3 members (phosphoglucomutase alpha-D-glucose-1,6-bisphosphate-dependent)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini / Simiiformes / Catarrhini / Cercopithecidae / Cercopithecinae /

Macaca

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

94.4%

This HOG has 99 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0990696	Bacteria	4861		90.7%	4
HOG:E0017691	Archaea	315		97.5%	4
HOG:E1031677	LUCA	233		42.9%	4
HOG:E0852141	p__Myxococcota	47		80.9%	4
HOG:E1028863	LUCA	33		93.9%	4
HOG:E0800843	Opisthokonta	13		92.3%	4
HOG:E0092039	Stramenopiles	12		91.7%	4
HOG:E0957572	f__Xanthomonadaceae	11		100.0%	4
HOG:E0962068	o__Pseudomonadales	11		100.0%	4
HOG:E0984628	c__Gammaproteobacteria	5		100.0%	4
HOG:E0958588	f__Cellvibrionaceae	4		100.0%	4
HOG:E0802326	Eukaryota	804		93.8%	3
HOG:E0802528	Eukaryota	752		62.2%	3
HOG:E0811379	Eukaryota	219		77.2%	3
HOG:E1000523	Bacteria	33		78.8%	3
HOG:E0008509	c__Thermoproteia	7		100.0%	3
HOG:E0821613	Eukaryota	7		42.9%	3
HOG:E0832820	Eukaryota	4		50.0%	3
HOG:E1025462	Bacteria	15		26.7%	2
HOG:E0820311	Eukaryota	13		61.5%	2
HOG:E0815790	Eukaryota	12		50.0%	2
HOG:E0284780	Mesangiospermae	6		66.7%	2
HOG:E0800290	Opisthokonta	6		50.0%	2
HOG:E1035924	LUCA	6		66.7%	2
HOG:E0826229	Eukaryota	5		60.0%	2

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