Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802046.5a.31e.40b with 18 members (ethanolamine kinase)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa /

... /

Panarthropoda / Arthropoda /

Arachnida /

Completeness score: 0.83

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

73.6%

This HOG has 7484 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0992336	Bacteria	857		82.7%	2
HOG:E0804934	Eukaryota	671		61.5%	2
HOG:E1032840	LUCA	630		70.3%	2
HOG:E1036206	LUCA	512		81.4%	2
HOG:E0807615	Eukaryota	463		63.1%	2
HOG:E1033467	LUCA	415		93.5%	2
HOG:E0995863	Bacteria	256		70.3%	2
HOG:E0802184	Eukaryota	246		95.5%	2
HOG:E1037073	LUCA	176		81.3%	2
HOG:E1001743	Bacteria	153		76.5%	2
HOG:E1008407	Bacteria	152		96.7%	2
HOG:E0935383	c__Bacilli	58		86.2%	2
HOG:E0146754	Sar	55		85.5%	2
HOG:E0935201	c__Bacilli	47		89.4%	2
HOG:E0477534	Ascomycota	42		85.7%	2
HOG:E1009322	Bacteria	40		70.0%	2
HOG:E0461712	Sordariomycetes	37		21.6%	2
HOG:E0741967	Euteleostomi	25		88.0%	2
HOG:E0987069	c__Gammaproteobacteria	23		60.9%	2
HOG:E0819394	Eukaryota	22		50.0%	2
HOG:E0014842	o__Halobacteriales	19		100.0%	2
HOG:E0120126	Oligohymenophorea	18		83.3%	2
HOG:E0482997	Fungi	18		77.8%	2
HOG:E0916971	p__Actinobacteriota	16		87.5%	2
HOG:E0577842	Acariformes	13		100.0%	2

Showing 1 to 25 of 7483 rows rows per page