Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0801701.3b with 2 members (Ap-4 complex subunit)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Sauria / Archelosauria /

Cryptodira /

Completeness score: 0.67

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

94.2%

This HOG has 102 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0801663	Eukaryota	1097		95.2%	3
HOG:E0802115	Eukaryota	846		75.4%	3
HOG:E0804866	Eukaryota	822		69.6%	3
HOG:E0802220	Eukaryota	798		86.1%	3
HOG:E0404840	Saccharomycetales	34		47.1%	3
HOG:E0405488	Saccharomycetales	34		52.9%	3
HOG:E0142258	Alveolata	17		88.2%	3
HOG:E0138767	Plasmodium	16		56.3%	3
HOG:E0135512	Piroplasmida	6		100.0%	3
HOG:E0348811	Ustilaginomycotina	4		100.0%	3
HOG:E0205505	Oryza	3		66.7%	3
HOG:E0238476	Brassica	3		100.0%	3
HOG:E0815329	Eukaryota	218		95.9%	2
HOG:E0746980	Gnathostomata	164		54.9%	2
HOG:E0747261	Gnathostomata	146		46.6%	2
HOG:E0746764	Gnathostomata	138		47.1%	2
HOG:E0475137	Pezizomycotina	110		85.5%	2
HOG:E0318991	Streptophyta	96		89.6%	2
HOG:E0780627	Eumetazoa	38		57.9%	2
HOG:E0829835	Eukaryota	35		97.1%	2
HOG:E0629360	Diptera	34		67.6%	2
HOG:E0697112	Clupeocephala	25		48.0%	2
HOG:E0814923	Eukaryota	23		73.9%	2
HOG:E0781704	Eumetazoa	18		66.7%	2
HOG:E0567084	Chromadorea	11		63.6%	2

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