Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0793988.2b.2a with 2 members (RB transcriptional corepressor like)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

... /

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Glires / Rodentia / Hystricomorpha /

Bathyergidae

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

51.0%

This HOG has 874 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0762458	Bilateria	192		46.4%	3
HOG:E0321303	Viridiplantae	178		81.5%	3
HOG:E0053773	Amoebozoa	6		83.3%	3
HOG:E0801902	Eukaryota	1139		97.3%	2
HOG:E0794228	Opisthokonta	764		96.6%	2
HOG:E0802120	Eukaryota	693		91.9%	2
HOG:E0802359	Eukaryota	681		95.9%	2
HOG:E0801734	Eukaryota	566		97.3%	2
HOG:E0793386	Opisthokonta	514		95.9%	2
HOG:E0793630	Opisthokonta	482		49.8%	2
HOG:E0778646	Eumetazoa	440		96.1%	2
HOG:E0772855	Bilateria	413		96.6%	2
HOG:E0294212	Magnoliopsida	253		97.6%	2
HOG:E0267952	Pentapetalae	235		99.1%	2
HOG:E0761457	Bilateria	229		71.6%	2
HOG:E0778383	Eumetazoa	229		96.1%	2
HOG:E0811685	Eukaryota	206		68.4%	2
HOG:E0761316	Bilateria	195		52.3%	2
HOG:E0795466	Opisthokonta	193		42.5%	2
HOG:E0276915	Mesangiospermae	177		98.3%	2
HOG:E0746891	Gnathostomata	175		98.9%	2
HOG:E0292683	Magnoliopsida	163		99.4%	2
HOG:E0746238	Gnathostomata	157		96.2%	2
HOG:E0276976	Mesangiospermae	156		98.7%	2
HOG:E0747099	Gnathostomata	144		91.0%	2

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