Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0793461.1a.1b with 1 members (syndecan binding protein)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

... /

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria /

Eulipotyphla

Completeness score: 0.50

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

97.7%

This HOG has 1153 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0793553	Opisthokonta	1416		0.1%	2
HOG:E0795444	Opisthokonta	735		39.2%	2
HOG:E0789717	Metazoa	691		42.0%	2
HOG:E0981835	o__Enterobacterales	574		61.1%	2
HOG:E0790576	Metazoa	481		82.7%	2
HOG:E0789168	Metazoa	465		79.1%	2
HOG:E0789748	Metazoa	370		32.7%	2
HOG:E0777248	Bilateria	353		89.0%	2
HOG:E0781292	Eumetazoa	331		87.9%	2
HOG:E0784191	Eumetazoa	296		52.4%	2
HOG:E0780741	Eumetazoa	244		74.6%	2
HOG:E0759355	Deuterostomia	208		80.8%	2
HOG:E0765816	Bilateria	199		56.3%	2
HOG:E0795460	Opisthokonta	194		37.1%	2
HOG:E0748901	Gnathostomata	188		64.9%	2
HOG:E0789762	Metazoa	177		39.0%	2
HOG:E0780774	Eumetazoa	176		82.4%	2
HOG:E0756444	Chordata	175		99.4%	2
HOG:E0754133	Vertebrata	168		95.8%	2
HOG:E0758231	Chordata	161		93.8%	2
HOG:E0745661	Gnathostomata	157		95.5%	2
HOG:E0746431	Gnathostomata	157		67.5%	2
HOG:E0854932	p__Planctomycetota	154		37.7%	2
HOG:E0476930	saccharomyceta	149		85.9%	2
HOG:E0752342	Vertebrata	149		94.6%	2

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