Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0793025.5c with 3 members (3-beta hydroxysteroid dehydrogenase/isomerase domain-containing protein)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

... /

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria /

Chiroptera /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

93.8%

This HOG has 3819 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0990764	Bacteria	28020		97.0%	1
HOG:E0792933	Opisthokonta	16889		96.5%	1
HOG:E0802096	Eukaryota	9367		93.3%	1
HOG:E0801597	Eukaryota	9232		94.4%	1
HOG:E0990715	Bacteria	8498		49.0%	1
HOG:E0990913	Bacteria	8347		93.5%	1
HOG:E0990673	Bacteria	5614		72.9%	1
HOG:E1027400	LUCA	5561		94.9%	1
HOG:E0990874	Bacteria	5256		96.6%	1
HOG:E0992190	Bacteria	4504		76.8%	1
HOG:E0801706	Eukaryota	4185		84.7%	1
HOG:E1027592	LUCA	3936		98.0%	1
HOG:E0990965	Bacteria	3722		99.7%	1
HOG:E0802596	Eukaryota	3610		87.4%	1
HOG:E0990737	Bacteria	3486		0.5%	1
HOG:E0990656	Bacteria	3444		37.1%	1
HOG:E1030684	LUCA	3373		97.2%	1
HOG:E1027413	LUCA	3248		99.0%	1
HOG:E1027325	LUCA	3128		91.5%	1
HOG:E0990724	Bacteria	3068		53.7%	1
HOG:E0990970	Bacteria	3030		84.5%	1
HOG:E0802524	Eukaryota	2859		96.2%	1
HOG:E0990678	Bacteria	2805		35.4%	1
HOG:E1027769	LUCA	2754		95.4%	1
HOG:E0801643	Eukaryota	2536		97.9%	1

Showing 1 to 25 of 3818 rows rows per page