Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0792940.6bsw with 4 members (Derived by automated computational analysis using gene prediction method Gnomon)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

... /

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Glires / Rodentia / Myomorpha /

Muroidea /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

20.2%

This HOG has 12033 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0801468	Eukaryota	253956		10.5%	2
HOG:E0276795	Mesangiospermae	5065		16.2%	2
HOG:E0892225	g__Streptomyces	4183		9.5%	2
HOG:E0789610	Metazoa	2453		78.9%	2
HOG:E0793013	Opisthokonta	1937		57.9%	2
HOG:E0854922	p__Planctomycetota	1834		18.2%	2
HOG:E0793032	Opisthokonta	1669		45.5%	2
HOG:E0793096	Opisthokonta	1586		50.7%	2
HOG:E0801822	Eukaryota	1521		77.1%	2
HOG:E0851706	p__Myxococcota	1098		77.2%	2
HOG:E0278112	Mesangiospermae	1094		55.5%	2
HOG:E0793157	Opisthokonta	1057		50.3%	2
HOG:E0793218	Opisthokonta	1038		73.9%	2
HOG:E0277584	Mesangiospermae	920		91.8%	2
HOG:E0793519	Opisthokonta	907		61.6%	2
HOG:E1027241	LUCA	832		96.2%	2
HOG:E0761617	Bilateria	799		62.7%	2
HOG:E0777848	Eumetazoa	774		81.0%	2
HOG:E0772616	Bilateria	772		64.8%	2
HOG:E0293040	Magnoliopsida	758		87.9%	2
HOG:E0777885	Eumetazoa	752		93.9%	2
HOG:E0755569	Chordata	729		59.7%	2
HOG:E0802809	Eukaryota	703		0.3%	2
HOG:E0777897	Eumetazoa	694		69.3%	2
HOG:E0761223	Bilateria	692		31.2%	2

Showing 1 to 25 of 12032 rows rows per page