Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0789656 with 30 members (mediator of RNA polymerase ii transcription subunit 18)

Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda /

... /

Mandibulata / Pancrustacea / Hexapoda / Neoptera / Endopterygota / Diptera / Brachycera / Cyclorrhapha / Schizophora /

Acalyptratae /

Completeness score: 0.97

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

74.7%

This HOG has 59 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E1034044	LUCA	283		99.6%	1
HOG:E0995180	Bacteria	272		85.7%	1
HOG:E0935618	c__Bacilli	205		100.0%	1
HOG:E1026591	Bacteria	193		87.6%	1
HOG:E1033190	LUCA	185		77.8%	1
HOG:E1027958	LUCA	184		98.4%	1
HOG:E0812446	Eukaryota	178		98.9%	1
HOG:E1033643	LUCA	175		99.4%	1
HOG:E0992154	Bacteria	168		100.0%	1
HOG:E0017967	Archaea	143		100.0%	1
HOG:E0994717	Bacteria	67		100.0%	1
HOG:E0475277	Pezizomycotina	60		100.0%	1
HOG:E1037654	LUCA	58		25.9%	1
HOG:E0989881	p__Proteobacteria	54		100.0%	1
HOG:E0464732	sordariomyceta	44		77.3%	1
HOG:E0404709	Saccharomycetales	35		54.3%	1
HOG:E0914122	c__Actinomycetia	34		100.0%	1
HOG:E0395298	Agaricomycotina	29		93.1%	1
HOG:E0961797	o__Pseudomonadales	26		100.0%	1
HOG:E0484347	Fungi	25		92.0%	1
HOG:E0863847	c__Spirochaetia	22		100.0%	1
HOG:E0972903	f__Pasteurellaceae	22		100.0%	1
HOG:E0001440	f__Thermococcaceae	12		100.0%	1
HOG:E0087990	Oomycota	12		16.7%	1
HOG:E0749224	Gnathostomata	12		100.0%	1

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