Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0789246.2d.4c with 27 members (aminoacyl tRNA synthetase complex interacting multifunctional protein)

Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda /

... /

Mandibulata / Pancrustacea / Hexapoda / Neoptera / Endopterygota / Diptera / Brachycera / Cyclorrhapha / Schizophora /

Acalyptratae /

Completeness score: 0.93

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

99%

This HOG has 1397 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0990798	Bacteria	5402		53.2%	1
HOG:E1027514	LUCA	4492		62.0%	1
HOG:E0991062	Bacteria	3642		47.1%	1
HOG:E1027266	LUCA	3507		97.8%	1
HOG:E0990717	Bacteria	2816		100.0%	1
HOG:E1030600	LUCA	2563		64.2%	1
HOG:E1028492	LUCA	2415		63.6%	1
HOG:E0990768	Bacteria	2262		99.2%	1
HOG:E1027350	LUCA	2229		33.6%	1
HOG:E1033232	LUCA	2082		100.0%	1
HOG:E1033243	LUCA	2081		100.0%	1
HOG:E0990853	Bacteria	2069		33.5%	1
HOG:E1033238	LUCA	2041		100.0%	1
HOG:E1027876	LUCA	2024		55.5%	1
HOG:E0991959	Bacteria	2010		40.3%	1
HOG:E1033948	LUCA	1945		86.5%	1
HOG:E1038404	LUCA	1945		58.7%	1
HOG:E1029110	LUCA	1922		66.6%	1
HOG:E1029914	LUCA	1725		51.4%	1
HOG:E1027854	LUCA	1540		93.7%	1
HOG:E1036179	LUCA	1531		72.4%	1
HOG:E1027539	LUCA	1477		52.6%	1
HOG:E0991431	Bacteria	1359		45.5%	1
HOG:E0804453	Eukaryota	1356		98.5%	1
HOG:E1027440	LUCA	1306		99.5%	1

Showing 1 to 25 of 1396 rows rows per page