Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0784917.1a.3b with 3 members (lectin serine peptidase)

Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi /

... /

Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria / Carnivora /

Caniformia /

Completeness score: 0.50

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

82.6%

This HOG has 4183 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0749156	Gnathostomata	173		75.1%	7
HOG:E0739204	Euteleostomi	170		80.0%	7
HOG:E0752558	Vertebrata	122		63.9%	6
HOG:E0702365	Neopterygii	45		55.6%	6
HOG:E0653995	Protostomia	117		4.3%	5
HOG:E0758403	Chordata	31		12.9%	5
HOG:E0771370	Bilateria	20		10.0%	5
HOG:E0784823	Eumetazoa	14		35.7%	5
HOG:E0521880	Gastropoda	10		20.0%	5
HOG:E0538347	Lophotrochozoa	7		28.6%	5
HOG:E0756039	Chordata	487		44.1%	4
HOG:E0784047	Eumetazoa	315		71.4%	4
HOG:E0746472	Gnathostomata	189		77.2%	4
HOG:E0756384	Chordata	165		75.2%	4
HOG:E0746520	Gnathostomata	160		43.8%	4
HOG:E0747251	Gnathostomata	156		71.2%	4
HOG:E0746994	Gnathostomata	153		47.7%	4
HOG:E0756562	Chordata	149		75.2%	4
HOG:E0739226	Euteleostomi	119		45.4%	4
HOG:E0727297	Eutheria	58		50.0%	4
HOG:E0738503	Sarcopterygii	56		37.5%	4
HOG:E0760273	Deuterostomia	52		46.2%	4
HOG:E0700774	Teleostei	40		45.0%	4
HOG:E0766767	Bilateria	35		40.0%	4
HOG:E0755884	Chordata	31		35.5%	4

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