Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0779839.2b with 10 members (contactin associated protein)

Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda / Mandibulata /

... /

Pancrustacea / Hexapoda / Neoptera / Endopterygota / Diptera /

Culicomorpha /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

42.1%

This HOG has 4295 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0779269	Eumetazoa	569		52.9%	6
HOG:E0761577	Bilateria	403		9.7%	6
HOG:E0781563	Eumetazoa	357		6.7%	6
HOG:E0786265	Eumetazoa	168		61.9%	6
HOG:E0761283	Bilateria	93		21.5%	6
HOG:E0784801	Eumetazoa	77		10.4%	6
HOG:E0771732	Bilateria	68		63.2%	6
HOG:E0749267	Gnathostomata	48		35.4%	6
HOG:E0747791	Gnathostomata	44		36.4%	6
HOG:E0762485	Bilateria	33		12.1%	6
HOG:E0537030	Lophotrochozoa	25		56.0%	6
HOG:E0784293	Eumetazoa	18		11.1%	6
HOG:E0697606	Clupeocephala	14		50.0%	6
HOG:E0538125	Lophotrochozoa	13		30.8%	6
HOG:E0761441	Bilateria	9		22.2%	6
HOG:E0663519	Protostomia	8		25.0%	6
HOG:E0514299	Pteriomorphia	7		28.6%	6
HOG:E0777854	Eumetazoa	464		7.5%	5
HOG:E0761374	Bilateria	235		3.8%	5
HOG:E0761375	Bilateria	227		7.9%	5
HOG:E0759207	Deuterostomia	169		76.3%	5
HOG:E0795702	Opisthokonta	155		15.5%	5
HOG:E0746195	Gnathostomata	146		40.4%	5
HOG:E0753034	Vertebrata	102		17.6%	5
HOG:E0639490	Pancrustacea	68		4.4%	5

Showing 1 to 25 of 4294 rows rows per page