Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0778068.1b with 47 members (protein-L-isoaspartate D-aspartate O- methyltransferase domain containing)

Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi / Neopterygii /

Completeness score: 0.98

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

98.3%

This HOG has 3748 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0990643	Bacteria	17097		85.8%	1
HOG:E0990830	Bacteria	2960		63.6%	1
HOG:E0991277	Bacteria	2599		48.4%	1
HOG:E1030600	LUCA	2563		64.2%	1
HOG:E1033114	LUCA	2462		98.4%	1
HOG:E1027336	LUCA	2458		98.8%	1
HOG:E0991387	Bacteria	2359		42.4%	1
HOG:E1029666	LUCA	2167		93.6%	1
HOG:E0990658	Bacteria	2127		92.2%	1
HOG:E1038280	LUCA	1883		100.0%	1
HOG:E0801957	Eukaryota	1875		89.6%	1
HOG:E0990944	Bacteria	1784		99.9%	1
HOG:E0803708	Eukaryota	1645		13.3%	1
HOG:E0801870	Eukaryota	1607		99.1%	1
HOG:E0991561	Bacteria	1528		99.9%	1
HOG:E1030603	LUCA	1407		69.7%	1
HOG:E0991506	Bacteria	1374		98.9%	1
HOG:E0805481	Eukaryota	1316		98.0%	1
HOG:E0991167	Bacteria	1313		100.0%	1
HOG:E0802712	Eukaryota	1289		97.4%	1
HOG:E1028319	LUCA	1236		89.7%	1
HOG:E0803350	Eukaryota	1180		0.5%	1
HOG:E0991547	Bacteria	1082		62.9%	1
HOG:E0792952	Opisthokonta	1052		98.5%	1
HOG:E0993843	Bacteria	1027		64.2%	1

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