Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0777921.4i.5a.16b with 2 members (leucine rich repeat containing)

Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi /

... /

Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria / Chiroptera /

Microchiroptera

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

49.1%

This HOG has 13754 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0770308	Bilateria	557		97.8%	2
HOG:E0777968	Eumetazoa	415		52.3%	2
HOG:E0642687	Arthropoda	78		60.3%	2
HOG:E0765471	Bilateria	67		71.6%	2
HOG:E0634361	Neoptera	58		39.7%	2
HOG:E0519366	Gastropoda	56		10.7%	2
HOG:E0702028	Neopterygii	43		100.0%	2
HOG:E0696313	Euteleosteomorpha	27		100.0%	2
HOG:E0518272	Lymnaeoidea	22		50.0%	2
HOG:E0531662	Mollusca	18		50.0%	2
HOG:E0537180	Lophotrochozoa	16		81.3%	2
HOG:E0537137	Lophotrochozoa	14		50.0%	2
HOG:E0590126	Arachnida	13		23.1%	2
HOG:E0538036	Lophotrochozoa	12		100.0%	2
HOG:E0540357	Lophotrochozoa	12		33.3%	2
HOG:E0766303	Bilateria	12		25.0%	2
HOG:E0519743	Gastropoda	10		50.0%	2
HOG:E0520221	Gastropoda	10		20.0%	2
HOG:E0669371	Asteroidea	10		40.0%	2
HOG:E0763837	Bilateria	10		90.0%	2
HOG:E0534381	Mollusca	8		75.0%	2
HOG:E0808753	Eukaryota	8		100.0%	2
HOG:E0516860	Autobranchia	7		28.6%	2
HOG:E0661154	Protostomia	7		28.6%	2
HOG:E0520478	Gastropoda	6		66.7%	2

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