Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0770345.1c with 19 members (ileal sodium/bile acid)

Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda /

Completeness score: 0.21

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

98.4%

This HOG has 196 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0992193	Bacteria	1897		16.1%	1
HOG:E0990918	Bacteria	1602		98.8%	1
HOG:E0802760	Eukaryota	1168		96.5%	1
HOG:E1030779	LUCA	1102		0.6%	1
HOG:E0983286	c__Gammaproteobacteria	970		36.9%	1
HOG:E0809429	Eukaryota	580		91.2%	1
HOG:E0803067	Eukaryota	571		80.2%	1
HOG:E0983494	c__Gammaproteobacteria	553		100.0%	1
HOG:E0802850	Eukaryota	541		98.7%	1
HOG:E0935045	c__Bacilli	367		63.2%	1
HOG:E0319074	Streptophyta	306		90.5%	1
HOG:E0017546	Archaea	300		74.0%	1
HOG:E0803295	Eukaryota	275		87.6%	1
HOG:E0810366	Eukaryota	253		68.8%	1
HOG:E0277850	Mesangiospermae	221		97.3%	1
HOG:E0798549	Opisthokonta	210		99.5%	1
HOG:E0294306	Magnoliopsida	156		95.5%	1
HOG:E0277265	Mesangiospermae	153		85.0%	1
HOG:E0018036	Archaea	138		100.0%	1
HOG:E0745838	Gnathostomata	132		99.2%	1
HOG:E0804542	Eukaryota	130		93.1%	1
HOG:E0314388	Embryophyta	118		93.2%	1
HOG:E0278039	Mesangiospermae	114		97.4%	1
HOG:E0465662	leotiomyceta	112		51.8%	1
HOG:E0319709	Streptophyta	110		96.4%	1

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