Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0761628.3a.1b with 65 members (basonuclin)

Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii /

... /

Tetrapoda / Amniota / Mammalia / Theria / Eutheria /

Boreoeutheria /

Completeness score: 0.99

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

38.0%

This HOG has 6736 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0804483	Eukaryota	1122		18.3%	2
HOG:E0755484	Chordata	1068		11.7%	2
HOG:E0760426	Deuterostomia	642		42.2%	2
HOG:E0756293	Chordata	566		50.0%	2
HOG:E0764027	Bilateria	487		22.6%	2
HOG:E0691698	Percomorphaceae	462		13.4%	2
HOG:E0706776	Toxicofera	455		7.0%	2
HOG:E0789141	Metazoa	443		63.4%	2
HOG:E0531383	Mollusca	440		12.3%	2
HOG:E0695451	Euteleosteomorpha	440		16.4%	2
HOG:E0761433	Bilateria	431		41.5%	2
HOG:E0682249	Cyprinoidei	426		20.2%	2
HOG:E0761786	Bilateria	419		91.2%	2
HOG:E0519423	Gastropoda	398		10.3%	2
HOG:E0697141	Clupeocephala	377		12.2%	2
HOG:E0761421	Bilateria	363		38.0%	2
HOG:E0589455	Arachnida	361		10.5%	2
HOG:E0754567	Vertebrata	357		13.7%	2
HOG:E0736575	Tetrapoda	337		15.4%	2
HOG:E0759193	Deuterostomia	337		42.1%	2
HOG:E0778045	Eumetazoa	337		27.3%	2
HOG:E0756035	Chordata	332		26.8%	2
HOG:E0536271	Lophotrochozoa	328		7.9%	2
HOG:E0732892	Amniota	320		14.7%	2
HOG:E0756296	Chordata	319		62.7%	2

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