Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0761129.2b with 4 members (nuclear receptor subfamily)

Bilateria / Protostomia / Ecdysozoa / Panarthropoda / Arthropoda / Mandibulata / Pancrustacea /

... /

Hexapoda / Neoptera / Endopterygota / Diptera / Culicomorpha / Culicidae / Culicinae /

Stegomyia

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

94.7%

This HOG has 863 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0780162	Eumetazoa	704		91.6%	2
HOG:E0761138	Bilateria	703		98.0%	2
HOG:E0762001	Bilateria	616		95.9%	2
HOG:E0759259	Deuterostomia	562		96.8%	2
HOG:E0780921	Eumetazoa	528		95.8%	2
HOG:E0761570	Bilateria	468		91.2%	2
HOG:E0761248	Bilateria	402		94.3%	2
HOG:E0761031	Bilateria	390		96.4%	2
HOG:E0779896	Eumetazoa	386		96.9%	2
HOG:E0763060	Bilateria	345		98.0%	2
HOG:E0761347	Bilateria	299		95.0%	2
HOG:E0771190	Bilateria	264		95.5%	2
HOG:E0762435	Bilateria	225		96.4%	2
HOG:E0761338	Bilateria	187		97.9%	2
HOG:E0745650	Gnathostomata	169		96.4%	2
HOG:E0746177	Gnathostomata	169		97.6%	2
HOG:E0746387	Gnathostomata	167		94.6%	2
HOG:E0747516	Gnathostomata	166		97.6%	2
HOG:E0745877	Gnathostomata	163		98.8%	2
HOG:E0746295	Gnathostomata	161		98.8%	2
HOG:E0746648	Gnathostomata	160		91.9%	2
HOG:E0747371	Gnathostomata	142		93.7%	2
HOG:E0747230	Gnathostomata	141		98.6%	2
HOG:E0740076	Euteleostomi	138		99.3%	2
HOG:E0762460	Bilateria	127		98.4%	2

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