Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0756039.1a with 4 members (CUB and Sushi multiple domains)

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota /

... /

Sauria / Archelosauria / Archosauria / Neognathae /

Galloanserae /

Completeness score: 0.80

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

44.1%

This HOG has 1088 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0782051	Eumetazoa	184		10.9%	28
HOG:E0778522	Eumetazoa	113		7.1%	28
HOG:E0531307	Mollusca	14		14.3%	28
HOG:E0659152	Protostomia	5		40.0%	28
HOG:E0739491	Euteleostomi	100		36.0%	20
HOG:E0755557	Chordata	19		15.8%	16
HOG:E0736843	Tetrapoda	7		28.6%	16
HOG:E0536052	Lophotrochozoa	6		33.3%	15
HOG:E0779910	Eumetazoa	314		31.5%	14
HOG:E0506842	Neoheterodontei	4		50.0%	14
HOG:E0507776	Neoheterodontei	3		66.7%	14
HOG:E0765840	Bilateria	87		23.0%	13
HOG:E0666764	Echinacea	3		66.7%	13
HOG:E0752326	Vertebrata	212		44.8%	12
HOG:E0781770	Eumetazoa	48		8.3%	12
HOG:E0536716	Lophotrochozoa	11		18.2%	12
HOG:E0708057	Episquamata	10		30.0%	12
HOG:E0538025	Lophotrochozoa	8		50.0%	12
HOG:E0669733	Asteroidea	3		66.7%	12
HOG:E0650538	Ecdysozoa	94		24.5%	11
HOG:E0647874	Panarthropoda	81		80.2%	11
HOG:E0567108	Chromadorea	16		18.8%	11
HOG:E0753545	Vertebrata	11		36.4%	11
HOG:E0670633	Eleutherozoa	5		40.0%	11
HOG:E0712736	Sauria	4		50.0%	11

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