Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0755551.1a with 6 members (cobalamin binding intrinsic factor)

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota /

... /

Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini / Simiiformes / Catarrhini /

Hominoidea /

Completeness score: 1.00

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

93.3%

This HOG has 295 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0746908	Gnathostomata	161		92.5%	2
HOG:E0761512	Bilateria	89		91.0%	2
HOG:E0589840	Arachnida	48		35.4%	2
HOG:E0922472	g__Bacillus_A	17		100.0%	2
HOG:E0570901	Araneoidea	7		85.7%	2
HOG:E0572794	Entelegynae	7		71.4%	2
HOG:E0589827	Arachnida	6		83.3%	2
HOG:E0780283	Eumetazoa	6		100.0%	2
HOG:E0728846	Eutheria	4		75.0%	2
HOG:E0009832	f__Archaeoglobaceae	3		66.7%	2
HOG:E0571288	Araneoidea	3		66.7%	2
HOG:E1033122	LUCA	1669		68.5%	1
HOG:E1027653	LUCA	930		19.5%	1
HOG:E0802210	Eukaryota	789		96.2%	1
HOG:E0991481	Bacteria	758		36.1%	1
HOG:E0802776	Eukaryota	732		94.4%	1
HOG:E0802556	Eukaryota	696		97.3%	1
HOG:E0479414	Dikarya	524		99.2%	1
HOG:E0992306	Bacteria	495		6.7%	1
HOG:E0774811	Bilateria	415		34.5%	1
HOG:E0779898	Eumetazoa	331		1.5%	1
HOG:E0740044	Euteleostomi	218		43.6%	1
HOG:E0476923	saccharomyceta	196		100.0%	1
HOG:E0746583	Gnathostomata	157		34.4%	1
HOG:E1011429	Bacteria	157		97.5%	1

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