Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0749284.1b with 19 members (apolipoprotein)

Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Acanthomorphata / Percomorphaceae / Ovalentaria /

Completeness score: 1.00

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

50.3%

This HOG has 185 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0749130	Gnathostomata	177		57.1%	2
HOG:E0748381	Gnathostomata	113		50.4%	2
HOG:E0736669	Tetrapoda	84		94.0%	2
HOG:E0949663	o__Rhizobiales	71		18.3%	2
HOG:E0300026	Spermatophyta	10		30.0%	2
HOG:E0763108	Bilateria	7		28.6%	2
HOG:E0828488	Eukaryota	3		66.7%	2
HOG:E0991962	Bacteria	1182		6.9%	1
HOG:E0793974	Opisthokonta	645		0.9%	1
HOG:E0318948	Streptophyta	179		28.5%	1
HOG:E0314078	Embryophyta	161		19.3%	1
HOG:E0141712	Alveolata	130		3.8%	1
HOG:E0831322	Eukaryota	118		8.5%	1
HOG:E0830849	Eukaryota	114		7.9%	1
HOG:E0967651	f__Burkholderiaceae	113		5.3%	1
HOG:E0738348	Sarcopterygii	110		45.5%	1
HOG:E0292688	Magnoliopsida	96		38.5%	1
HOG:E0278840	Mesangiospermae	85		47.1%	1
HOG:E1016515	Bacteria	77		2.6%	1
HOG:E0936204	c__Bacilli	64		43.8%	1
HOG:E0465671	leotiomyceta	61		19.7%	1
HOG:E0908365	f__Mycobacteriaceae	60		11.7%	1
HOG:E0277961	Mesangiospermae	55		40.0%	1
HOG:E0701879	Neopterygii	54		70.4%	1
HOG:E0396194	Basidiomycota	51		3.9%	1

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