Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0748915.1c with 13 members (DNA-binding protein inhibitor ID-4)

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Sauria / Lepidosauria /

Completeness score: 0.93

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

99.2%

This HOG has 1739 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0755456	Chordata	497		98.8%	1
HOG:E0779907	Eumetazoa	452		97.8%	1
HOG:E0755467	Chordata	370		54.1%	1
HOG:E0794634	Opisthokonta	362		98.3%	1
HOG:E0770269	Bilateria	338		97.6%	1
HOG:E0752454	Vertebrata	324		97.2%	1
HOG:E0778527	Eumetazoa	302		99.0%	1
HOG:E0276988	Mesangiospermae	281		95.0%	1
HOG:E0700817	Teleostei	245		97.6%	1
HOG:E0297505	Spermatophyta	244		4.1%	1
HOG:E0781482	Eumetazoa	243		97.1%	1
HOG:E0790437	Metazoa	239		99.6%	1
HOG:E0268109	Pentapetalae	219		100.0%	1
HOG:E0759734	Deuterostomia	217		100.0%	1
HOG:E0784135	Eumetazoa	214		98.1%	1
HOG:E0765842	Bilateria	212		100.0%	1
HOG:E0756440	Chordata	210		65.7%	1
HOG:E0746717	Gnathostomata	204		92.6%	1
HOG:E0293716	Magnoliopsida	201		99.0%	1
HOG:E0759652	Deuterostomia	201		99.0%	1
HOG:E0765495	Bilateria	194		97.9%	1
HOG:E0739342	Euteleostomi	193		99.0%	1
HOG:E0278413	Mesangiospermae	173		100.0%	1
HOG:E0746789	Gnathostomata	170		100.0%	1
HOG:E0756320	Chordata	169		100.0%	1

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