Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0747029 with 6 members (Rho GTPase activating protein 25)

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Sauria / Lepidosauria /

... /

Episquamata / Toxicofera /

Serpentes /

Completeness score: 0.86

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

95.7%

This HOG has 3248 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0793342	Opisthokonta	655		62.4%	2
HOG:E0752562	Vertebrata	359		74.1%	2
HOG:E0790244	Metazoa	297		44.4%	2
HOG:E0761415	Bilateria	230		69.1%	2
HOG:E0756318	Chordata	208		86.5%	2
HOG:E0790476	Metazoa	196		61.7%	2
HOG:E0759648	Deuterostomia	171		77.2%	2
HOG:E0786590	Eumetazoa	171		90.1%	2
HOG:E0793502	Opisthokonta	163		30.1%	2
HOG:E0319530	Streptophyta	160		88.1%	2
HOG:E0746516	Gnathostomata	155		56.8%	2
HOG:E0746745	Gnathostomata	154		92.2%	2
HOG:E0746946	Gnathostomata	130		77.7%	2
HOG:E0779864	Eumetazoa	116		81.9%	2
HOG:E0474684	Pezizomycotina	115		89.6%	2
HOG:E0796752	Opisthokonta	86		30.2%	2
HOG:E0280595	Mesangiospermae	73		91.8%	2
HOG:E0630366	Endopterygota	59		78.0%	2
HOG:E0700430	Teleostei	44		68.2%	2
HOG:E0754572	Vertebrata	43		76.7%	2
HOG:E0221361	Petrosaviidae	42		85.7%	2
HOG:E0745565	Gnathostomata	42		88.1%	2
HOG:E0702200	Neopterygii	40		62.5%	2
HOG:E0741078	Euteleostomi	36		77.8%	2
HOG:E0700950	Teleostei	34		64.7%	2

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