Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0746769 with 18 members (cadherin related family member)

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Sauria / Archelosauria / Archosauria /

Completeness score: 0.95

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

76.3%

This HOG has 465 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0781766	Eumetazoa	656		15.7%	9
HOG:E0779981	Eumetazoa	602		28.2%	9
HOG:E0780389	Eumetazoa	439		57.9%	9
HOG:E0772633	Bilateria	289		57.8%	9
HOG:E0761438	Bilateria	280		11.4%	9
HOG:E0784379	Eumetazoa	250		41.6%	9
HOG:E0649271	Ecdysozoa	144		42.4%	9
HOG:E0823351	Eukaryota	141		67.4%	9
HOG:E0761500	Bilateria	115		64.3%	9
HOG:E0656447	Protostomia	96		50.0%	9
HOG:E0777953	Eumetazoa	96		27.1%	9
HOG:E0793455	Opisthokonta	63		30.2%	9
HOG:E0639764	Pancrustacea	61		42.6%	9
HOG:E0741010	Euteleostomi	37		56.8%	9
HOG:E0754237	Vertebrata	29		41.4%	9
HOG:E0533217	Mollusca	26		38.5%	9
HOG:E0539208	Lophotrochozoa	23		56.5%	9
HOG:E0759060	Deuterostomia	23		34.8%	9
HOG:E0771249	Bilateria	20		25.0%	9
HOG:E0659967	Protostomia	19		42.1%	9
HOG:E0823348	Eukaryota	19		15.8%	9
HOG:E0536814	Lophotrochozoa	18		22.2%	9
HOG:E0519239	Gastropoda	17		23.5%	9
HOG:E0519913	Gastropoda	17		17.6%	9
HOG:E0642870	Arthropoda	17		64.7%	9

Showing 1 to 25 of 464 rows rows per page