Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0745756 with 8 members (histone H4 -N-methyl-L-lysine20 N-methyltransferase KMT5B)

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria /

... /

Eutheria / Boreoeutheria / Laurasiatheria /

Artiodactyla /

Completeness score: 1.00

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

94.6%

This HOG has 964 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0731981	Mammalia	66		100.0%	2
HOG:E0780683	Eumetazoa	39		97.4%	2
HOG:E0700959	Teleostei	37		97.3%	2
HOG:E0626407	Schizophora	29		96.6%	2
HOG:E0634657	Neoptera	12		83.3%	2
HOG:E0607173	Aculeata	9		100.0%	2
HOG:E0707732	Episquamata	9		100.0%	2
HOG:E0586301	Ixodidae	7		100.0%	2
HOG:E0692868	Percomorphaceae	6		100.0%	2
HOG:E0560311	Spiruromorpha	5		100.0%	2
HOG:E0686957	Protacanthopterygii	5		100.0%	2
HOG:E0348457	Ustilaginomycotina	4		100.0%	2
HOG:E0572657	Entelegynae	4		100.0%	2
HOG:E0609983	Culicinae	4		75.0%	2
HOG:E0704448	Anura	4		100.0%	2
HOG:E0523936	Gastropoda	3		100.0%	2
HOG:E0628876	Diptera	3		100.0%	2
HOG:E0669748	Asteroidea	3		100.0%	2
HOG:E0680989	Chondrichthyes	3		100.0%	2
HOG:E0804738	Eukaryota	909		29.4%	1
HOG:E0805204	Eukaryota	554		99.1%	1
HOG:E0780232	Eumetazoa	477		98.3%	1
HOG:E0802914	Eukaryota	458		45.9%	1
HOG:E0781489	Eumetazoa	355		44.5%	1
HOG:E0794539	Opisthokonta	348		21.6%	1

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