OMA: MSA of HOG:E0736551.2a at Boreoeutheria

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0736551.2a with 59 members (urokinase plasminogen activator surface)

Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria /

Completeness score: 0.89

‹

Label

.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188.190.192.194.196.198.200.202.204.206.208.210.212.214.216.218.220.222.224.226.228.230.232.234.236.238.240.242.244.246.248.250.252.254.256.258.260.262.264.266.268.270.272.274.276.278.280.282.284.286.288.290.292.294.296.298.300.302.304.306.308.310.312.314.316.318.320.322.324.326.328.330.332.334.336.338.340.342.344.346.348.350.352.354.356.358.360.362.364.366.368.370.372.374.376.378.380.382.384.386.388.390.392.394.396.398.400.402.404.406.408.410.412.414.416.418.420.422.424.426.428.430.432.434.436.438.440.442.444.446.448.450.452.454.456.458.460.462.464.466.468.470

RABIT17239

OCHPR02666

DIPOR21124

FUKDA18671

HETGA19242

CAVAP14922

CAVPO20538

CHILA23706

OCTDE23205

MOUSE54527

RATNO19572

NANGA16996

ICTTR00727

CERAT43782

CHLSB15849

MACFA18427

MACMU19220

MACNE44956

MANLE34188

PAPAN22771

COLAP28370

RHIBE33184

RHIRO33652

HUMAN44096

PANPA20687

PANTR18526

PONAB15900

NOMLE12832

AOTNA41726

CALJA23389

CEBIM28131

SAIBB39846

CARSF26356

PROCO06092

OTOGA03765

BOBOX12022

BOVIN11239

CAPHI09158

SHEEP05494

PIGXX27990

VICPA08493

BALMU16458

TURTR00529

CANLF00979

VULVU27111

MUSPF07062

AILME07949

URSAM23858

URSMA25311

FELCA33741

PANLE29627

SURSU09464

RHIFE01618

MYOLU13543

SORAR01941

EQUAS29620

HORSE02123

CERSS28745

MANJA13625