Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0321409.1b.1b.2a with 9 members (Histone deacetylase interacting domain-containing protein)

Viridiplantae / Streptophyta / Streptophytina / Embryophyta / Tracheophyta / Euphyllophyta / Spermatophyta /

... /

Magnoliopsida / Mesangiospermae / Pentapetalae / rosids / malvids /

Brassicaceae /

Completeness score: 0.86

‹

Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

87.0%

This HOG has 65 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0809050	Eukaryota	512		90.0%	3
HOG:E0482696	Fungi	256		90.6%	3
HOG:E0648453	Panarthropoda	69		94.2%	3
HOG:E0314496	Embryophyta	14		50.0%	3
HOG:E0364157	Pucciniomycotina	10		90.0%	3
HOG:E0236948	Arabidopsis	5		60.0%	3
HOG:E0343001	Microsporidia	5		80.0%	3
HOG:E0481730	Dikarya	5		80.0%	3
HOG:E0229068	Solanaceae	4		50.0%	3
HOG:E0251798	Brassicaceae	4		100.0%	3
HOG:E0261252	fabids	4		75.0%	3
HOG:E0394607	Agaricomycetes	4		75.0%	3
HOG:E0307491	Spermatophyta	3		66.7%	3
HOG:E0332030	Rhizopus	3		100.0%	3
HOG:E0806565	Eukaryota	76		84.2%	2
HOG:E0806902	Eukaryota	34		38.2%	2
HOG:E0280155	Mesangiospermae	8		50.0%	2
HOG:E0314730	Embryophyta	8		75.0%	2
HOG:E0239370	Brassica	6		100.0%	2
HOG:E0143093	Alveolata	5		80.0%	2
HOG:E0763920	Bilateria	5		100.0%	2
HOG:E0228147	Solanaceae	4		50.0%	2
HOG:E0238922	Brassica	4		50.0%	2
HOG:E0794409	Opisthokonta	4		50.0%	2
HOG:E0155301	Mamiellales	3		66.7%	2

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