Related genomes of genome UC180 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC180 - Berkelbacteria bacterium GW2011_GWE1_39_12 none

Proteome version: Genbank; ASM102973v1; GCA_001029735.1; 19-JUN-2015 with 992 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC147	bacterium CG_4_10_14_0_2_um_filter_33_32	279
2	UC181	candidate division CPR2 bacterium GW2011_GWC2_39_35 none	269
3	UC069	Candidatus Kerfeldbacteria bacterium NC_groundwater_1953_Pr3_S-0.2um_48_12	246
4	UC007	Patescibacteria group bacterium MM_PC_MetaG.mb.169	238
5	UC171	candidate division CPR3 bacterium GWF2_35_18 none	226
6	DESOD	Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628 / Singapore I)	222
7	ACET1	Acetivibrio thermocellus (strain DSM 1313 / LMG 6656 / LQ8)	221
8	ALKCA	Alkalicella caledoniensis	220
9	DESRM	Desulfotomaculum reducens (strain MI-1)	219
10	DESHY	Desulfitobacterium hafniense (strain Y51)	219

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	4
2	TRYCI	Trypanosoma congolense (strain IL3000)	4
3	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	10
4	VITCO	Vittaforma corneae (strain ATCC 50505)	12
5	NANGC	Nannochloropsis gaditana (strain CCMP526)	12
6	TRAHO	Trachipleistophora hominis	13
7	EDHAE	Edhazardia aedis (strain USNM 41457)	14
8	EIMMA	Eimeria maxima	14
9	MEGSC	Megaselia scalaris	14
10	SYMMI	Symbiodinium microadriaticum	14