Related genomes of genome UC090 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

UC090 - Candidatus Dadabacteria bacterium MH-Pat-all_metabat2_32

Proteome version: Genbank; ASM1407529v1; GCA_014075295.1; 05-AUG-2020 with 1130 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U16DE	Deltaproteobacteria bacterium NC_groundwater_25_Pr7_B-0.1um_64_59	493
2	UC014	Nitrospinaceae bacterium SI073_bin188	469
3	CITBB	Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)	466
4	ANAD2	Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)	465
5	ANASK	Anaeromyxobacter sp. (strain K)	464
6	GEOSM	Geobacter sp. (strain M21)	463
7	U01NT	Nitrospirae bacterium NC_groundwater_240_Ag_S-0.2um_61_13	462
8	GEOUR	Geotalea uraniireducens (strain Rf4)	461
9	ANADF	Anaeromyxobacter sp. (strain Fw109-5)	457
10	PSEAE	Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)	457

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	11
2	TRYCI	Trypanosoma congolense (strain IL3000)	12
3	VITCO	Vittaforma corneae (strain ATCC 50505)	12
4	RALSL	Ralstonia solanacearum	14
5	EDHAE	Edhazardia aedis (strain USNM 41457)	16
6	TRAHO	Trachipleistophora hominis	19
7	NEMP3	Nematocida parisii (strain ERTm3)	20
8	SPRLO	Spraguea lophii (strain 42_110)	20
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	21
10	MEGSC	Megaselia scalaris	22