Related genomes of genome U13DE based on shared OMA groups

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

U13DE - Deltaproteobacteria bacterium NC_groundwater_823_Pr1_B-0.1um_55_34

Proteome version: Genbank; ASM1619682v1; GCA_016196825.1; 21-DEC-2020 with 3424 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	U02BD	Bdellovibrionales bacterium SZAS-2	718
2	MYXXD	Myxococcus xanthus (strain DK1622)	693
3	MYXSD	Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8)	686
4	U01BD	Bdellovibrionales bacterium SZAS-4	686
5	BDEBA	Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100)	686
6	STIAD	Stigmatella aurantiaca (strain DW4/3-1)	677
7	MYXFH	Myxococcus fulvus (strain ATCC BAA-855 / HW-1)	675
8	ANAD2	Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)	667
9	CORCM	Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2)	663
10	ANASK	Anaeromyxobacter sp. (strain K)	658

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	16
2	ENTBH	Enterocytozoon bieneusi (strain H348)	17
3	EDHAE	Edhazardia aedis (strain USNM 41457)	20
4	TRYCI	Trypanosoma congolense (strain IL3000)	20
5	TRAHO	Trachipleistophora hominis	23
6	NEMP3	Nematocida parisii (strain ERTm3)	25
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	27
8	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	27
9	SPRLO	Spraguea lophii (strain 42_110)	28
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	28