Related genomes of genome THACA based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

THACA - Thanatephorus cucumeris (strain AG1-IA)

Proteome version: Ensembl Fungi 56; Rhisol_AG1IA_1.0; GCA_000334115.1 with 10489 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	COPCI	Coprinopsis cinerea	1623
2	ARMGA	Armillaria gallica	1605
3	ARMOS	Armillaria ostoyae	1503
4	TRAVS	Trametes versicolor (strain FP-101664)	1502
5	GLOTR	Gloeophyllum trabeum	1494
6	HYPSF	Hypholoma sublateritium (strain FD-334 SS-4)	1492
7	GLOTA	Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)	1488
8	WOLCO	Wolfiporia cocos (strain MD-104)	1486
9	AURST	Auricularia subglabra (strain TFB-10046 / SS5)	1480
10	STEHR	Stereum hirsutum (strain FP-91666)	1480

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	9
2	RALSL	Ralstonia solanacearum	14
3	ZINIC	Zinderia insecticola (strain CARI)	16
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	16
5	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	17
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	17
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	18
8	ONYPE	Onion yellows phytoplasma (strain OY-M)	18
9	UC184	candidate division WWE3 bacterium RAAC2_WWE3_1	18
10	UC105	Patescibacteria group bacterium Baikal-deep-G193	18