Related genomes of genome STRMU based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

STRMU - Streptococcus mutans serotype c (strain ATCC 700610 / UA159)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 118) with 1952 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	STRMN	Streptococcus mutans serotype c (strain NN2025)	1643
2	STRG1	Streptococcus gallolyticus (strain ATCC 43143 / F-1867)	1224
3	STRG3	Streptococcus gallolyticus (strain UCN34)	1222
4	STRG2	Streptococcus gallolyticus (strain ATCC BAA-2069)	1213
5	STREH	Streptococcus salivarius (strain CCHSS3)	1174
6	STRE8	Streptococcus salivarius (strain JIM8777)	1164
7	STRSV	Streptococcus sanguinis (strain SK36)	1153
8	STRMD	Streptococcus macedonicus (strain ACA-DC 198)	1143
9	STRPX	Streptococcus pasteurianus (strain ATCC 43144 / JCM 5346 / CDC 1723-81)	1140
10	STRE5	Streptococcus salivarius (strain 57.I)	1125

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	11
2	NEMP3	Nematocida parisii (strain ERTm3)	16
3	TRAHO	Trachipleistophora hominis	16
4	TRYCI	Trypanosoma congolense (strain IL3000)	16
5	ENTBH	Enterocytozoon bieneusi (strain H348)	16
6	EDHAE	Edhazardia aedis (strain USNM 41457)	16
7	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	17
8	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	19
9	VAVCU	Vavraia culicis (isolate floridensis)	22
10	NOSCE	Nosema ceranae (strain BRL01)	22