Related genomes of genome STREH based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

STREH - Streptococcus salivarius (strain CCHSS3)

Proteome version: 27-FEB-2015 (Rel. 123, Last updated, Version 3) with 2001 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	STRE5	Streptococcus salivarius (strain 57.I)	1680
2	STRE8	Streptococcus salivarius (strain JIM8777)	1628
3	STRTN	Streptococcus thermophilus (strain ND03)	1243
4	STRT2	Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)	1234
5	STRT1	Streptococcus thermophilus (strain CNRZ 1066)	1234
6	STRTD	Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9)	1223
7	STRG3	Streptococcus gallolyticus (strain UCN34)	1222
8	STRG2	Streptococcus gallolyticus (strain ATCC BAA-2069)	1217
9	STRG1	Streptococcus gallolyticus (strain ATCC 43143 / F-1867)	1214
10	STRGC	Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)	1211

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VITCO	Vittaforma corneae (strain ATCC 50505)	13
2	ENTBH	Enterocytozoon bieneusi (strain H348)	17
3	TRYCI	Trypanosoma congolense (strain IL3000)	18
4	EDHAE	Edhazardia aedis (strain USNM 41457)	18
5	NEMP3	Nematocida parisii (strain ERTm3)	18
6	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	18
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	19
8	TRAHO	Trachipleistophora hominis	21
9	SPRLO	Spraguea lophii (strain 42_110)	24
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	24