Related genomes of genome RICRO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

RICRO - Rickettsia rickettsii (strain Iowa)

Proteome version: 18-JAN-2008 (Rel. 94, Last updated, Version 1) with 1384 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RICRS	Rickettsia rickettsii (strain Sheila Smith)	1127
2	RICP3	Rickettsia philipii (strain 364D)	1065
3	RICPT	Rickettsia parkeri (strain Portsmouth)	982
4	RICCN	Rickettsia conorii (strain ATCC VR-613 / Malish 7)	981
5	RICS1	Rickettsia slovaca (strain 13-B)	892
6	RICAE	Rickettsia africae (strain ESF-5)	877
7	RICMS	Rickettsia montanensis (strain OSU 85-930)	876
8	RICR3	Rickettsia rhipicephali (strain 3-7-female6-CWPP)	865
9	RICAG	Rickettsia amblyommatis (strain GAT-30V)	851
10	RICJY	Rickettsia japonica (strain ATCC VR-1363 / YH)	851

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYCI	Trypanosoma congolense (strain IL3000)	8
2	EDHAE	Edhazardia aedis (strain USNM 41457)	10
3	VITCO	Vittaforma corneae (strain ATCC 50505)	11
4	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	12
5	RALSL	Ralstonia solanacearum	13
6	ENTBH	Enterocytozoon bieneusi (strain H348)	13
7	SYMMI	Symbiodinium microadriaticum	15
8	TRAHO	Trachipleistophora hominis	16
9	NEMP3	Nematocida parisii (strain ERTm3)	17
10	GIAIC	Giardia intestinalis (strain ATCC 50803 / WB clone C6)	19