Related genomes of genome PSYA2 based on shared OMA groups

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PSYA2 - Psychrobacter arcticus (strain DSM 17307 / VKM B-2377 / 273-4)

Proteome version: 01-JUL-2008 (Rel. 93, Last updated, Version 55) with 2125 proteins.

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Genome information
Chromosome viewer
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PSYCK	Psychrobacter cryohalolentis (strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 / K5)	1684
2	PSYWF	Psychrobacter sp. (strain PRwf-1)	1351
3	ACISD	Acinetobacter oleivorans (strain JCM 16667 / KCTC 23045 / DR1)	1020
4	ACIBC	Acinetobacter baumannii (strain ACICU)	1018
5	ACIBD	Acinetobacter baumannii (strain TCDC-AB0715)	1013
6	ACIBY	Acinetobacter baumannii (strain AYE)	1013
7	ACIB1	Acinetobacter baumannii (strain 1656-2)	1007
8	ACIAD	Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)	1004
9	ACIB5	Acinetobacter baumannii (strain AB0057)	997
10	ACICP	Acinetobacter calcoaceticus (strain PHEA-2)	997

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	16
2	VITCO	Vittaforma corneae (strain ATCC 50505)	19
3	EDHAE	Edhazardia aedis (strain USNM 41457)	19
4	TRAHO	Trachipleistophora hominis	21
5	NANEQ	Nanoarchaeum equitans (strain Kin4-M)	24
6	NOSCE	Nosema ceranae (strain BRL01)	24
7	VAVCU	Vavraia culicis (isolate floridensis)	26
8	NEMP3	Nematocida parisii (strain ERTm3)	26
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	26
10	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	27