Related genomes of genome PROMA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PROMA - Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)

Proteome version: 02-MAR-2010 (Rel. 118, Last updated, Version 117) with 1881 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PROM4	Prochlorococcus marinus (strain MIT 9211)	1480
2	PROM1	Prochlorococcus marinus (strain NATL1A)	1438
3	PROMT	Prochlorococcus marinus (strain NATL2A)	1437
4	PROM3	Prochlorococcus marinus (strain MIT 9303)	1361
5	PROMM	Prochlorococcus marinus (strain MIT 9313)	1360
6	PROMS	Prochlorococcus marinus (strain AS9601)	1347
7	PROM9	Prochlorococcus marinus (strain MIT 9312)	1345
8	PROMP	Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / NIES-2087 / MED4)	1338
9	PROM0	Prochlorococcus marinus (strain MIT 9301)	1329
10	SYNSC	Synechococcus sp. (strain CC9605)	1327

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	3
2	ENTBH	Enterocytozoon bieneusi (strain H348)	10
3	VITCO	Vittaforma corneae (strain ATCC 50505)	16
4	TRAHO	Trachipleistophora hominis	17
5	EDHAE	Edhazardia aedis (strain USNM 41457)	18
6	VAVCU	Vavraia culicis (isolate floridensis)	20
7	NEMP3	Nematocida parisii (strain ERTm3)	20
8	TRYCI	Trypanosoma congolense (strain IL3000)	21
9	SPRLO	Spraguea lophii (strain 42_110)	22
10	NOSCE	Nosema ceranae (strain BRL01)	23