Related genomes of genome PLAMA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PLAMA - Plasmodium malariae

Proteome version: Genbank; PmUG01; GCF_900090045.1; 25-APR-2019 with 5927 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PLAGO	Plasmodium gonderi	4232
2	PLAYE	Plasmodium yoelii	4052
3	PLABA	Plasmodium berghei (strain Anka)	4049
4	PLAF7	Plasmodium falciparum (isolate 3D7)	4031
5	PLAKH	Plasmodium knowlesi (strain H)	3984
6	PLAVS	Plasmodium vivax (strain Salvador I)	3938
7	PLAFR	Plasmodium fragile	3916
8	PLAFC	Plasmodium falciparum (isolate Camp / Malaysia)	3736
9	PLAFP	Plasmodium falciparum (isolate Palo Alto / Uganda)	3493
10	PLACD	Plasmodium cynomolgi (strain B)	3389

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	4
2	ZINIC	Zinderia insecticola (strain CARI)	22
3	UC116	Patescibacteria group bacterium E44_bin74	23
4	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	26
5	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	27
6	SULMC	Sulcia muelleri (strain CARI)	31
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	31
8	MYCHA	Mycoplasma haemolamae (strain Purdue)	32
9	UC105	Patescibacteria group bacterium Baikal-deep-G193	34
10	MYCSL	Mycoplasma suis (strain Illinois)	34