Related genomes of genome PENPA based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PENPA - Penicillium patulum

Proteome version: Ensembl Fungi 48; ASM156193v1 with 9630 proteins.

‹

Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	PENCH	Penicillium chrysogenum	7080
2	PENRW	Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255)	7049
3	PENNA	Penicillium nalgiovense	6903
4	PENRF	Penicillium roqueforti (strain FM164)	6697
5	PENIT	Penicillium italicum	6518
6	ASPPA	Aspergillus parasiticus	6005
7	PEND2	Penicillium digitatum (strain PHI26 / CECT 20796)	5947
8	ASPCI	Aspergillus calidoustus	5906
9	NEOFI	Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)	5887
10	ASPA1	Aspergillus aculeatus (strain ATCC 16872 / CBS 172.66 / WB 5094)	5813

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC116	Patescibacteria group bacterium E44_bin74	28
2	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	36
3	ZINIC	Zinderia insecticola (strain CARI)	37
4	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	38
5	MYCHA	Mycoplasma haemolamae (strain Purdue)	40
6	RALSL	Ralstonia solanacearum	42
7	UC105	Patescibacteria group bacterium Baikal-deep-G193	44
8	MYCS3	Mycoplasma suis (strain KI_3806)	44
9	UC148	bacterium (Candidatus Torokbacteria) CG_4_10_14_0_2_um_filter_35_8	44
10	MYCSL	Mycoplasma suis (strain Illinois)	45