Related genomes of genome PARBH based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PARBH - Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087)

Proteome version: 26-AUG-2010 (Rel. 105, Last updated, Version 1) with 2687 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CAUSK	Caulobacter sp. (strain K31)	1034
2	HYPNA	Hyphomonas neptunium (strain ATCC 15444)	1031
3	CAUVN	Caulobacter vibrioides (strain NA1000 / CB15N)	1016
4	MARMM	Maricaulis maris (strain MCS10)	1012
5	PARL1	Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)	1008
6	CAUVC	Caulobacter vibrioides (strain ATCC 19089 / CB15)	995
7	HIRBI	Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418)	980
8	CAUST	Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059)	972
9	PHEZH	Phenylobacterium zucineum (strain HLK1)	961
10	BRASB	Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)	960

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTBH	Enterocytozoon bieneusi (strain H348)	16
2	VITCO	Vittaforma corneae (strain ATCC 50505)	18
3	EDHAE	Edhazardia aedis (strain USNM 41457)	22
4	TRYCI	Trypanosoma congolense (strain IL3000)	23
5	NEMP3	Nematocida parisii (strain ERTm3)	24
6	TRAHO	Trachipleistophora hominis	24
7	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	25
8	UC149	Candidatus Huberarchaeum crystalense CG_4_9_14_0_8_um_filter_31_21	26
9	SPRLO	Spraguea lophii (strain 42_110)	26
10	NOSCE	Nosema ceranae (strain BRL01)	28