Related genomes of genome ODILC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ODILC - Odinarchaeota archaeon (strain LCB_4)

Proteome version: Refseq; ASM194066v1; GCA_001940665.1; 10-JAN-2017 with 1584 proteins.

‹

Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	UC121	Candidatus Methanosuratus subterraneum Ch88	482
2	METAC	Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)	480
3	METPS	Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE)	477
4	METAR	Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)	475
5	METBF	Methanosarcina barkeri (strain Fusaro / DSM 804)	473
6	THOAR	Thorarchaeota archaeon (strain OWC)	461
7	METCZ	Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254)	460
8	PYRFU	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	460
9	METMA	Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)	459
10	FERPA	Ferroglobus placidus (strain DSM 10642 / AEDII12DO)	450

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	10
2	TRYCI	Trypanosoma congolense (strain IL3000)	19
3	UC087	Candidatus Pacebacteria bacterium LF-bin-483	20
4	ZINIC	Zinderia insecticola (strain CARI)	22
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	22
6	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	24
7	MYCHA	Mycoplasma haemolamae (strain Purdue)	25
8	MYCSL	Mycoplasma suis (strain Illinois)	25
9	UC116	Patescibacteria group bacterium E44_bin74	26
10	MYCS3	Mycoplasma suis (strain KI_3806)	26